CDS
| Accession Number | TCMCG046C36837 |
| gbkey | CDS |
| Protein Id | XP_026656778.1 |
| Location | complement(join(44842..44859,45079..45135,45240..45348,49318..49399,50473..50557,50631..50750,50846..50896,51220..51285,52233..52280,52393..52441,52539..52592,52706..52765,52882..52940,53161..53277,53377..53388)) |
| Gene | LOC103696654 |
| GeneID | 103696654 |
| Organism | Phoenix dactylifera |
Protein
| Length | 328aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA249070 |
| db_source | XM_026800977.1 |
| Definition | flap endonuclease 1-A isoform X2 [Phoenix dactylifera] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs |
GO:0005575
[VIEW IN EMBL-EBI] GO:0005622 [VIEW IN EMBL-EBI] GO:0005623 [VIEW IN EMBL-EBI] GO:0005634 [VIEW IN EMBL-EBI] GO:0005730 [VIEW IN EMBL-EBI] GO:0031974 [VIEW IN EMBL-EBI] GO:0031981 [VIEW IN EMBL-EBI] GO:0043226 [VIEW IN EMBL-EBI] GO:0043227 [VIEW IN EMBL-EBI] GO:0043228 [VIEW IN EMBL-EBI] GO:0043229 [VIEW IN EMBL-EBI] GO:0043231 [VIEW IN EMBL-EBI] GO:0043232 [VIEW IN EMBL-EBI] GO:0043233 [VIEW IN EMBL-EBI] GO:0044422 [VIEW IN EMBL-EBI] GO:0044424 [VIEW IN EMBL-EBI] GO:0044428 [VIEW IN EMBL-EBI] GO:0044446 [VIEW IN EMBL-EBI] GO:0044464 [VIEW IN EMBL-EBI] GO:0070013 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGGGTATAAGAGGTTTGACGAAGCTTCTCGCGGACAACGCTCCGAAGGCCATGAAGGAACAAAAGTTCGAGAGCTATTTCGGTCGGAAGATCGCCATCGACGCCAGCATGAGCATCTACCAGTTCCTCATTGTTGTGGGAAGGACGGGGATGGAAACGCTCACCAACGAGGCCGGTGAAGTCACAAGTCACTTGCAAGGAATGTTCAACCGGACAATAAGATTGCTGGAGGCTGGAATGAAGCCAGTATATGTTTTTGATGGTCAGCCACCAGATCTGAAGAAACAAGAGCTTGCAAAGAGGTTCTCGAGAAGGGAGGATGCCACCAAGGATTTGAGTACAGCAATAGAGGCTGGTGATAAGGAGAGTATTGAAAAGTTCAGCAAAAGGACTGTGAAGGTTACAAAGCAGCACAATGAAGACTGTAAACGACTTCTAAGATTGATGGGTGTCCCTGTAATTGAGGCACCTTCTGAAGCAGAAGCGGAGTGTGCAGAACTTTGTAAAAGTGATAAGGTATATGCTGTGGCCTCAGAGGATATGGATTCGCTAACTTTTGGGGCCCCTAGGTTTCTTCGCCACTTAATGGATCCGAGCTCCAAAAAAATCCCTGTCATGGAATATGAAGTCTCAAAGGTACTAGAGGAACTAGAACTCACCATGGACCAATTCATCGACTTGTGCATTCTTAGTGGATGTGACTACTGTGATAGTATTAAAGGTATTGGGGGCCAAACAGCTTTGAAGCTTATCCGTCAGCATGGTTGTATAGAAAATATGTTGGAGAACATAAACAAAGAAAGGTATCAAATACCTGAGGACTGGCCATATCAAGAAGCTCGACACTTGTTTAAAGAACCTATTGTGTCTAAAGAATTTTCAGAGCTCAAATGGACTGCTCCAGATGAGGAGGGTCTTGTGGACTTTTTGGTGAAAGAAAATGGTTTCAACCATGATCGAGTAATAAAGACTGGAATCCTTTTTTAA |
| Protein: MGIRGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGMKPVYVFDGQPPDLKKQELAKRFSRREDATKDLSTAIEAGDKESIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAECAELCKSDKVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEYEVSKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGCIENMLENINKERYQIPEDWPYQEARHLFKEPIVSKEFSELKWTAPDEEGLVDFLVKENGFNHDRVIKTGILF |